PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID XP_008242461.1
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Maloideae; Amygdaleae; Prunus
Family NAC
Protein Properties Length: 488aa    MW: 54926.9 Da    PI: 7.1268
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
XP_008242461.1genomeBGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM116.13.6e-36461881128
             NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......lelee....vikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratk..... 79 
                     lp+G++F+Ptd+el+ e+L++kvegk+      +   +    +i+   +i++++P++Lp  v+ +  + +fF++ +k+y+tg+rk+r+++     
  XP_008242461.1  46 LPAGVKFDPTDQELI-EHLEAKVEGKDtkshplI---DefipTIEGEdGICYTHPEKLP-GVTRDGLSRHFFHRPSKAYTTGTRKRRKIQtecdl 135
                     799************.99*********6665443...133333666646**********.555666799******************73334555 PP

             NAM  80 ...sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                        + +W++tgk+++v++ +g+++g+kk+Lv+y   g+++k+ekt+Wvmh+y+l
  XP_008242461.1 136 qggETRWHKTGKTRPVMV-NGKQKGCKKILVLYtnFGKNRKPEKTNWVMHQYHL 188
                     544778************.999***********5547999999*********98 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-3842207IPR003441NAC domain
PROSITE profilePS5100532.79446207IPR003441NAC domain
PfamPF023651.9E-1647188IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MNKSNLGSIR SSDLIDAKLE EHQLCGSKQC PGCGHKLEGK PDWLGLPAGV KFDPTDQELI  60
EHLEAKVEGK DTKSHPLIDE FIPTIEGEDG ICYTHPEKLP GVTRDGLSRH FFHRPSKAYT  120
TGTRKRRKIQ TECDLQGGET RWHKTGKTRP VMVNGKQKGC KKILVLYTNF GKNRKPEKTN  180
WVMHQYHLGQ HEEEKEGELV VSKIFYQTQP RQCNWSDRAS ATTGEGSSDI VPANSRRDSG  240
SGSCSSKEII PPHSHSHSHR EHDQMSAVAS GVAAAAPISS YSAMDIHQLK SDHFSFAPFR  300
KSFDEVGIGG EASTAREGPA SGTCEEMRGE HHHQRSVPQP HHHHHHHHMA HEVVPDHPQH  360
DQHQQQQQQL HHQQIATAFH ISRPSHPIST IISPPPLHHT SIILDQDSYS RIMLQNENFQ  420
AQQQHQQQQQ QQHHKMGARS ASGLEELIMG CTSSSNVKEE SSMPNPQEAE WMKYSSFWPD  480
PDNPDHHG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A2e-124418813140Stress-induced transcription factor NAC1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00460DAPTransfer from AT4G29230Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1981140.0KF198114.1 Malus hupehensis NAC domain protein (NAC16) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008242461.10.0PREDICTED: uncharacterized protein LOC103340794
TrEMBLM5W1R30.0M5W1R3_PRUPE; Uncharacterized protein
STRINGVIT_11s0016g02880.t010.0(Vitis vinifera)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF45203458
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29230.11e-145NAC domain containing protein 75